PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00259.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 86aa    MW: 9294.7 Da    PI: 8.247
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00259.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.65.1e-26554251
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl  ++s
  Zpz_sc00259.1.g00010.1.am.mk  5 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLSHFAS 54
                                  89********************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-28155IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.539156IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-24258IPR002100Transcription factor, MADS-box
PfamPF003191.1E-24552IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-151833IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-153354IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MAIRRIDNLA ARQVTFSKRR RGLFKKAEEL SILCDAEVGL VVFSATGKLS HFASSSSLSV  60
DGGDHQLSAD RSCVILDFMV VGVPPD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0360481e-64BT036048.1 Zea mays full-length cDNA clone ZM_BFb0093D17 mRNA, complete cds.
GenBankBT0382091e-64BT038209.1 Zea mays full-length cDNA clone ZM_BFb0217J06 mRNA, complete cds.
GenBankBT0616081e-64BT061608.1 Zea mays full-length cDNA clone ZM_BFb0164I07 mRNA, complete cds.
GenBankBT0873241e-64BT087324.1 Zea mays full-length cDNA clone ZM_BFb0039N23 mRNA, complete cds.
GenBankBT0878521e-64BT087852.1 Zea mays full-length cDNA clone ZM_BFb0227O08 mRNA, complete cds.
GenBankEU9561481e-64EU956148.1 Zea mays clone 1558111 MADS-box transcription factor 47 mRNA, complete cds.
GenBankEU9627091e-64EU962709.1 Zea mays clone 244916 MADS-box transcription factor 47 mRNA, complete cds.
GenBankKJ7269261e-64KJ726926.1 Zea mays clone pUT3471 MADS transcription factor (MADS68) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651772.11e-29PREDICTED: MADS-box transcription factor 47 isoform X3
RefseqXP_008651766.12e-29PREDICTED: MADS-box transcription factor 47 isoform X1
RefseqXP_008651762.12e-29PREDICTED: MADS-box transcription factor 47 isoform X1
RefseqNP_001306702.12e-29MADS-box transcription factor 47
SwissprotQ5K4R07e-30MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLC0HH027e-30C0HH02_MAIZE; Uncharacterized protein
TrEMBLB4FM712e-29B4FM71_MAIZE; Uncharacterized protein
TrEMBLB4FG102e-29B4FG10_MAIZE; MADS transcription factor
STRINGGRMZM2G059102_P035e-29(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-23MIKC_MADS family protein